MultipleTesting.AdaptiveFdrResult (JDistlib 0.10.0-SNAPSHOT API)

java.lang.Object

jdistlib.disttest.MultipleTesting.AdaptiveFdrResult

Enclosing class:: MultipleTesting

public static final class MultipleTesting.AdaptiveFdrResult extends Object

Result of the level-dependent two-stage BKY procedure.

Method Summary

Modifier and Type

Method

Description

int

getEstimatedTrueNulls()

Returns the first-stage estimate of the number of true nulls.

double

getFinalLevel()

Returns the BH level used for the final stage.

boolean[]

getRejected()

Returns rejection flags in input order; missing values are false.

int

getRejectedCount()

Returns the final number of rejected hypotheses.

double

getStageOneLevel()

Returns q/(1+q), the BH level used in stage one.

int

getStageOneRejections()

Returns the number rejected by the first-stage BH procedure.

double

getThreshold()

Returns the largest rejected raw p-value, or NaN.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details
- getRejected
  
  public boolean[] getRejected()
  
  Returns rejection flags in input order; missing values are false.
- getRejectedCount
  
  public int getRejectedCount()
  
  Returns the final number of rejected hypotheses.
- getStageOneRejections
  
  public int getStageOneRejections()
  
  Returns the number rejected by the first-stage BH procedure.
- getEstimatedTrueNulls
  
  public int getEstimatedTrueNulls()
  
  Returns the first-stage estimate of the number of true nulls.
- getStageOneLevel
  
  public double getStageOneLevel()
  
  Returns q/(1+q), the BH level used in stage one.
- getFinalLevel
  
  public double getFinalLevel()
  
  Returns the BH level used for the final stage.
- getThreshold
  
  public double getThreshold()
  
  Returns the largest rejected raw p-value, or NaN.